Tổng quan vai trò của hệ vi sinh vật đối với sức khoẻ đất
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Tổng quan vai trò của hệ vi sinh vật đối với sức khoẻ đất
Tóm tắt
Sức khỏe đất chỉ khả năng của đất có thể duy trì các chức năng quan trọng trong hệ sinh thái. Các yếu tố sinh học là chìa khóa để thực hiện các chức năng trong hệ sinh thái. Hệ vi sinh vật đất giữ vai trò trung tâm, điều phối các dòng vật chất và năng lượng, đồng thời tham gia trực tiếp vào các quá trình sinh học quan trọng trong đất, nhờ các hoạt động của vi sinh vật có lợi trong đất mà các chức năng sinh thái, môi trường và miễn dịch của đất được duy trì. Bài viết này trình bày vai trò quan trọng của vi sinh vật có lợi đối với sức khoẻ đất trên cơ sở phân tích các quá trình sinh học như chu trình carbon, vòng tuần hoàn và chuyển hoá chất dinh dưỡng trong đất, ổn định kết cấu đất, kiểm soát sâu bệnh hại, kiểm soát ô nhiễm đất, v.v. Những phân tích này góp phần làm rõ cơ sở lý luận và thực tiễn về vai trò của vi sinh vật đất trong quản lý sức khỏe đất.
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Tài liệu tham khảo
- Ayangbenro, A. S. and Babalola, O. O. (2017). A new strategy for heavy metal polluted environments: A review of microbial biosorbents. International Journal of Environmental Research and Public Health, 14(1): 94.
- Bai, J. et al. (2014). Biosorption mechanisms involved in immobilization of soil Pb by Bacillus subtilis DBM in a multi-metal-contaminated soil. Journal of Environmental Sciences, 26(10): 2056-2064.
- Bakken, L. R. and Frostegard, A. (2020). Emerging options mitigating N₂O emissions from food production by manipulating the soil microbiota. Current Opinion in Environmental Sustainability, 47: 89-94.
- Badri, D. V. et al. (2013). Potential impact of soil microbiomes on the leaf metabolome and on herbivore feeding behavior. New Phytologist, 198(1): 264-273.
- Bergkemper, F. et al. (2016). Phosphorus depletion in forest soils shapes bacterial communities towards phosphorus recycling systems. Environmental Microbiology, 18(6): 1988-2000.
- Bloch, S. E. et al. (2020). Biological nitrogen fixation in maize: Optimizing nitrogenase expression in a root-associated diazotroph. Journal of Experimental Botany, 71(15): 4591-4603.
- Blundell, R. et al. (2020). Organic management promotes natural pest control through altered plant resistance to insects. Nature Plants, 6(5): 483-491.
- Charyulu, P. B. B. N. and Rao, V. R. (1981). Influence of carbon substrates and moisture regime on nitrogen fixation in paddy soils. Soil Biology & Biochemistry, 13(1): 39-42.
- Chen, H. et al. (2021). Soil microbial CO₂ fixation plays a significant role in terrestrial carbon sink in a dryland ecosystem: A four year small-scale field-plot observation on the Tibetan Plateau. Science of the Total Environment, 761: 143282.
- Chen, Q. L. et al. (2019). Loss of soil microbial diversity exacerbates spread of antibiotic resistance. Soil Ecology Letters, 1(1): 3-13.
- Chen, Q. L. et al. (2019). Antibiotic resistomes in plant microbiomes. Trends in Plant Science, 24(6): 530-541.
- Cheng, M. G. et al. (2022). Oxygenases as powerful weapons in the microbial degradation of pesticides. Annual Review of Microbiology, 76: 325-348.
- Coban, O. et al. (2022). Soil microbiota as game-changers in restoration of degraded lands. Science, 375(6584): abe0725.
- Coskun, D. et al. (2017). Nitrogen transformations in modern agriculture and the role of biological nitrification inhibition. Nature Plants, 3(6): 17074.
- Cosgrove, L.et al. (2010). Effect of biostimulation and bioaugmentation on degradation of polyurethane buried in soil. Applied and Environmental Microbiology, 76(3): 810-819.
- Trần Viết Cường và cs.. (2018). Giáo trình vi sinh vật học môi trường. Hà Nội: NXB Bách Khoa Hà Nội.
- Lê Đình Cường và cs.. (2022). Nghiên cứu đánh giá khả năng lưu giữ carbon trong đất nông nghiệp. Thông tin khoa học và công nghệ hạt nhân, 70: 37 -41.
- Dai, Z. M.et al. (2020). Long-term nutrient inputs shift soil microbial functional profiles of phosphorus cycling in diverse agroecosystems. The ISME Journal, 14(3): 757-770.
- Deng, J. Z.et al. (2015). Synergistic effects of soil microstructure and bacterial EPS on drying rate in emulated soil micromodels. Soil Biology & Biochemistry, 83: 116-124.
- Doran, J. W. et al. (2000). Soil health and sustainability: managing the biotic component of soil quality. Applied Soil Ecology, 15(1): 3-11
- Feng, X, H. et al. (2022). Nitrogen input enhances microbial carbon use efficiency by altering plant-microbe-mineral interactions. Global Change Biology, 28(16): 4845-4860.
- Gao, N. et al. (2018). Simultaneous removal of ciprofloxacin, norfloxacin, sulfamethoxazole by co-producing oxidative enzymes system of Phanerochaete chrysosporium and Pycnoporus sanguineus. Chemosphere, 195: 146-155.
- Goyal, N., Jain, S. C., Banerjee, U. C. (2003). Comparative studies on the microbial adsorption of heavy metals. Advances in Environmental Research, 7(2): 311-319.
- Herridge, D. F., Peoples, M. B., and Boddey, R. M. (2008). Global inputs of biological nitrogen fixation in agricultural systems. Plant and Soil, 311(1): 1-18.
- Hermans, S. M. et al. (2020). Using soil bacterial communities to predict physico-chemical variables and soil quality. Microbiome, 8(1): 1-13.
- Hink, L. et al. (2017). Kinetics of NH₃-oxidation, NO-turnover, N₂O-production and electron flow during oxygen depletion in model bacterial and archaeal ammonia oxidisers. Environmental Microbiology, 19(12): 4882-4896.
- Hu, J.et al. (2016). Probiotic diversity enhances rhizosphere microbiome function and plant disease suppression. mBio, 7(6): e01790-16.
- Huang, Q. et al. (2022). Metabolic pathways of CO₂ fixing microorganisms determined C-fixation rates in grassland soils along the precipitation gradient. Soil Biology & Biochemistry, 172: 108764.
- Huang, Y. et al. (2019). LDPE microplastic films alter microbial community composition and enzymatic activities in soil. Environmental Pollution, 254: 112983.
- Huang, Y. L. et al. (2021). Labile carbon facilitated phosphorus solubilization as regulated by bacterial and fungal communities in Zea mays. Soil Biology & Biochemistry, 163: 108465.
- Irikitin, Y. et al. (2006). Rhizobacterial community-level, sole carbon source utilization pattern affects the delay in the bacterial wilt of tomato grown in rhizobacterial community model system. Applied Soil Ecology, 34(1): 27-32.
- Jaber, L. R., Enkerli, J. (2016). Effect of seed treatment duration on growth and colonization of Vicia faba by endophytic Beauveria bassiana and Metarhizium brunneum. Biological Control, 103: 187-195.
- Jian, S. Y.et al.(2016). Soil extracellular enzyme activities, soil carbon and nitrogen storage under nitrogen fertilization: A meta-analysis. Soil Biochemistry, 101: 32-43.
- Karlen, D. L., Andrews, S. S., Doran, J. W. (2001). Soil quality: Current concepts and applications . Advances in Agronomy, 74(01):1-40
- Kallenbach, C. M., Frey, S. D., and Grandy, A. S. (2016). Direct evidence for microbial-derived soil organic matter formation and its ecophysiological controls. Nature Communications, 7(1): 13630.
- Kuypers, M. M. M., Marchant, H. K., and Kartal, B. (2018). The microbial nitrogen-cycling network. Nature Reviews Microbiology, 16(5): 263-276.
- Kos, M., Tuijl, M. A. B., Roo, J. et al. (2015) . Species-specific plant-soil feedback effects on above-ground plant-insect interactions. Journal of Ecology, 103(4): 898-904.
- Lau, K. E. M. et al. (2015). A novel bacterial community index to assess stream ecological health. Freshwater Biology, 60(10): 1988-2002.
- Lehmann, A., Zheng, W. S., and Rillig, M. C. (2017). Soil biota contributions to soil aggregation. Nature Ecology & Evolution, 1(12): 1828-1835.
- Li, X. Z., Luo, Y. M., Hou, D. Y. (2022). The Indicators,framework and procedures for soil health:a critical review. Acta Pedologica Sinica, 59(3): 617-625.
- Lin, Y. X. et al. (2018). Long-term application of lime or pig manure rather than plant residues suppressed diazotroph abundance and diversity and altered community structure in an acidic Ultisol. Soil Biology & Biochemistry, 123: 218-228.
- Lin. H. et al. (2020). Acidic conditions enhance the removal of sulfonamide antibiotics and antibiotic resistance determinants in swine manure. Environmental Pollution, 263: 114439.
- Liang, C., Zhu, X. F. (2021). The soil microbial carbon pump as a new concept for terrestrial carbon sequestration. Scientia Sinica: Terrae, 51(5): 680-695.
- Liang, C. et al. (2019). Quantitative assessment of microbial necromass contribution to soil organic matter. Global Change Biology, 25(11): 3578-3590.
- Liu, Y. G. et al. (2008). Study on the biosorption of heavy metals by fungi[J]. Journal of Hunan University: Natural Sciences, 35(1): 71-74.
- Liu, Y. L., Wang, P., Wang, J. K. (2023). Formation and stability mechanism of soil aggregates: Progress and prospect. Acta Pedologica Sinica, 60(3): 627-643.
- Lu, J. L., Jia, P., Feng, S. W., et al. (2022). Remarkable effects of microbial factors on soil phosphorus bioavailability: A country-scale study. Global Change Biology, 28(14): 4459-4471.
- Mendes, L. W. et al. (2018). Breeding for soil-borne pathogen resistance impacts active rhizosphere microbiome of common bean. The ISME Journal, 12(12): 3038-3042.
- Merino-Martin, L. et al. (2021). Interacting effects of land use type, soil microbes and plant traits on aggregate stability. Soil Biology & Biochemistry, 154: 108072.
- Phạm Thị Miền, Phan Minh Thu (2021). Vi sinh vật chuyển hóa lân khó tan trong đất và tiềm năng áp dụng trong nông nghiệp. Tạp chí Khoa học Nông nghiệp Việt Nam, 19(8): 1028-1038.
- Montanarella, L. et al. (2015).The Status of the World's Soil Resources (Main Report). Rome: Food and agriculture organization of the united nations
- Mosa, K. A. et al. (2016). Potential biotechnological strategies for the cleanup of heavy metals and metalloids. Frontiers in Plant Science, 7: 303.
- Muhonja, C. N. et al. (2018). Biodegradability of polyethylene by bacteria and fungi from Dandora dumpsite Nairobi-Kenya. PLoS One, 13(7): e0198446.
- Muvea, A. M. et al. (2014). Colonization of onions by endophytic fungi and their impacts on the biology of Thrips tabaci. PLoS One, 9(9): e108242.
- Nazir, M. J. et al. (2024). Harnessing soil carbon sequestration to address climate change challenges in agriculture. Soil & Tillage Research, 2024:237
- Oliverio, A. M. et al. (2020). The role of phosphorus limitation in shaping soil bacterial communities and their metabolic capabilities. mBio, 11(5): e01718-20.
- Olagoke, F. K. et al. (2022). Importance of substrate quality and clay content on microbial extracellular polymeric substances production and aggregate stability in soils. Biology and Fertility of Soils, 58(4): 435-457.
- Park, Y.et al. (2022). Strategies of organic phosphorus recycling by soil bacteria: Acquisition, metabolism, and regulation. Environmental Microbiology Reports, 14: 3-24.
- Park, S. Y., Kim, C. G. (2019) . Biodegradation of micro-polyethylene particles by bacterial colonization of a mixed microbial consortium isolated from a landfill site. Chemosphere, 222: 527-533.
- Nguyễn Ngọc Quỳnh và cs.. (2019). Nghiên cứu vi sinh vật chuyển hoá hydrocarbon. Tạp chí Khoa học Công nghệ Nông nghiệp Việt Nam, 9(106): 88 - 91.
- Rashid, M. I. et al. (2016). Bacteria and fungi can contribute to nutrients bioavailability and aggregate formation in degraded soils. Microbiological Research, 183: 26-41.
- Rillig, M. C. (2004). Arbuscular mycorrhizae, glomalin, and soil aggregation. Canadian Journal of Soil Science, 84(4): 355-363.
- Rillig, M. C., Lehmann, A. (2020). Microplastic in terrestrial ecosystems. Science, 368(6498): 1430-1431.
- Rodriguez, H. et al. (2006). Genetics of phosphate solubilization and its potential applications for improving plant growth-promoting bacteria. Plant and Soil, 287(1): 15-21.
- Rubol, S. et al. (2013). Modeling soil moisture and oxygen effects on soil biogeochemical cycles including dissimilatory nitrate reduction to ammonium (DNRA). Advances in Water Resources, 62: 106-124.
- Sander, M. (2019). Biodegradation of polymeric mulch films in agricultural soils: Concepts, knowledge gaps, and future research directions. Environmental Science & Technology, 53(5): 2304-2315.
- Sanchez, C. (2020). Fungal potential for the degradation of petroleum-based polymers: An overview of macro - biodegradation. Biotechnology Advances, 40: 107501.
- Sharma, S. B. et al. (2013). Phosphate solubilizing microbes: Sustainable approach for managing phosphorus deficiency in agricultural soils. SpringerPlus, 2(1): 587.
- Song, H. et al. (2020). Structure and activity of PPX/GppA homologs from Escherichia coli and Helicobacter pylori. The FEBS Journal, 287(9): 1865-1885.
- Song, W. J. et al. (2020). Influence of metals and metalloids on the composition and fluorescence quenching of the extracellular polymeric substances produced by the polymorphic fungus Aureobasidium pullulans. Applied Microbiology and Biotechnology, 104(16): 7155-7164.
- Sun, Y. Z. et al. (2022). Biodegradable and conventional microplastics exhibit distinct microbiome, functionality, and metabolome changes in soil. Journal of Hazardous Materials, 424: 127282.
- Tao, C. Y. et al. (2020). Bio-organic fertilizers stimulate indigenous soil Pseudomonas populations to enhance plant disease suppression. Microbiome, 8(1): 137.
- Teuten, E. L. et al. (2009). Transport and release of chemicals from plastics to the environment and to wildlife. Philosophical Transactions: Biological Sciences, 364 (1526): 2027-2045.
- Thauer, R. K. (2007). Microbiology. A fifth pathway of carbon fixation. Science, 318(5857): 1732-1733.
- Thompson, J., Johansen, R., Dunbar, J. et al. (2019). Machine learning to predict microbial community functions: An analysis of organic carbon from litter decomposition. PLoS One, 14(7): e0215502.
- Toju, H. et al. (2018). Core microbiomes for sustainable agroecosystems. Nature Plants, 4(5): 247-257.
- Nguyễn Thị Hiền Trang và cs.. (2024). Cố định kim loại nặng bằng phương pháp vi sinh vật tạo kết tủa carbonate bởi priestia megaterium ND22. Hội nghị khoa học toàn quốc về công nghệ sinh học. 598 -603
- Tribedi, P., Sil, A. K. (2014). Cell surface hydrophobicity: A key component in the degradation of polyethylene succinate by Pseudomonas sp. AKS2.Journal of Applied Microbiology, 116(2): 295-303.
- Lê Thị Trinh (2013). Bước đầu nghiên cứu chủng vi sinh vật trong đất cát pha nhiều mùn có khả năng tham gia quá trình phân hủy thuốc trừ sâu cơ phốt pho chứa hoạt chất Diazinon. Tạp chí Khoa học Công nghệ Việt Nam, 15: 47-50.
- Wang, B. R.et al. (2021). Microbial necromass as the source of soil organic carbon in global ecosystems. Soil Biology & Biochemistry, 162: 108422.
- Wang, C. et al. (2021). The temperature sensitivity of soil: Microbial biodiversity, growth, and carbon mineralization.The ISME Journal, 15(9): 2738-2747.
- Wang, C. et al. (2021). Large-scale importance of microbial carbon use efficiency and necromass to soil organic carbon. Global Change Biology, 27(10): 2039-2048.
- Wang, W. Y. et al. (2021). Continuous application of conservation tillage affects in situ N₂O emissions and nitrogen cycling gene abundances following nitrogen fertilization. Soil Biology & Biochemistry, 157: 108239.
- Wang, X. H. et al. (2020). Poly-γ-glutamic acid-producing bacteria reduced Cd uptake and effected the rhizosphere microbial communities of lettuce. Journal of Hazardous Materials, 2020, 398: 123146.
- Wan, Y. et al. (2020). Effects of plastic contamination on water evaporation and desiccation cracking in soil. Science of the Total Environment, 654: 576-582.
- Wei, R., and Zimmermann, W. (2017). Microbial enzymes for the recycling of recalcitrant petroleum-based plastics: How far are we?. Microbial Biotechnology, 10(6): 1308-1322.
- Wei, X. M. et al. (2019). Rare taxa of alkaline phosphomonoesterase-harboring microorganisms mediate soil phosphorus mineralization. Soil Biology & Biochemistry, 131: 62-70.
- Wei, Z. et al. (2015). Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health. Nature Communications, 6(1): 8413.
- Wilhelm, R. C., Vanes, H. M., Buckley, D. H. (2022). Predicting measures of soil health using the microbiome and supervised machine learning. Soil Biology & Biochemistry, 164: 108472.
- Wilpiszeski, R. L. et al. (2019). Soil aggregate microbial communities: Towards understanding microbiome interactions at biologically relevant scales. Applied and Environmental Microbiology, 85(14): e00324-19.
- Wu, J. et al. (2023). Antibiotics and antibiotic resistance genes in agricultural soils: A systematic analysis. Critical Reviews in Environmental Science and Technology, 53(7): 847-864.
- Wu, J. J., Cheng, X. L., Liu, G. H. (2022). Increased soil organic carbon response to fertilization is associated with increasing microbial carbon use efficiency: Data synthesis. Soil Biology & Biochemistry, 171: 108731.
- Wu, S. J. et al. (2022). Cd immobilization mechanisms in a Pseudomonas strain and its application in soil Cd remediation. Journal of Hazardous Materials, 425: 127919.
- Wu, W. C. et al. (2022). In situ diversity of metabolism and carbon use efficiency among soil bacteria. Science Advances, 8(44): eabq3958.
- Xiao, K. Q. et al. (2021). Metagenomic and ¹⁴C tracing evidence for autotrophic microbial CO₂ fixation in paddy soils. Environmental Microbiology, 2021, 23(2): 924-933.
- Yang, W. W. et al. (2021). Effects of microplastics on plant growth and arbuscular mycorrhizal fungal communities in a soil spiked with ZnO nanoparticles. Soil Biology & Biochemistry, 2021, 155: 108179.
- Yao, Q. M. et al. (2018). Community proteogenomics reveals the systemic impact of phosphorus availability on microbial functions in tropical soil. Nature Ecology & Evolution, 2(3): 499-509.
- You, L. C. et al. (2022). Global meta-analysis of terrestrial nitrous oxide emissions and associated functional genes under nitrogen addition. Soil Biology & Biochemistry, 165: 108523.
- You, X. X. et al. (2022). Microplastics in the soil: A review of distribution, anthropogenic impact, and interaction with soil microorganisms based on meta-analysis. Science of the Total Environment, 2022, 832: 154975.
- Yuan, J. et al. (2020). Predicting disease occurrence with high accuracy based on soil macroecological patterns of Fusarium wilt. The ISME Journal, 14(12): 2936-2950.
- Zhang, J. L.et al. (2020). Soil health and agriculture green development: Opportunities and challenges. Acta Pedologica Sinica, 57(4): 783-796.
- Zhang, J. Z. et al. (2022). Advances in the indicator system and evaluation approaches of soil health. Acta Pedologica Sinica, 59(3): 603-616.
- Zhang, J. et al. (2022). Oxidation of organoarsenicals and antimonite by a novel flavin monooxygenase widely present in soil bacteria. Environmental Microbiology, 24(2): 752-761.
- Zhang, N. et al. (2021). Theory of microbial coexistence in promoting soil-plant ecosystem health. Biology and Fertility of Soils, 57(7): 897-911.
- Zhang, X. Y. et al. (2021). Systematical review of interactions between microplastics and microorganisms in the soil environment. Journal of Hazardous Materials, 418: 126288.
- Zhao, X. C. et al. (2023). Mean annual temperature and carbon availability respectively controlled the contributions of bacterial and fungal residues to organic carbon accumulation in topsoil across China's forests. Global Ecology and Biogeography, 32(1): 120-131.
- Zhou, X. et al. (2019). Turning pig manure into biochar can effectively mitigate antibiotic resistance genes as organic fertilizer. Science of the Total Environment, 649: 902-908.
- Zhu, D. et al. (2022). Soil plastispheres as hotspots of antibiotic resistance genes and potential pathogens. The ISME Journal, 16(2): 521-532.
- Zhu, X. F. et al. (2020). The soil microbial carbon pump: From conceptual insights to empirical assessments. Global Change Biology, 26(11): 6032-6039
- Zhu, Y. G. et al. (2021). Linking the soil microbiome to soil health. Scientia Sinica: Vitae, 51(1): 1-11.